PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000352.1_g00056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 308aa    MW: 32451.1 Da    PI: 4.4068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000352.1_g00056.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-193383155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Itr_sc000352.1_g00056.1 33 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRG 83
                             6899******.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-133383IPR001471AP2/ERF domain
CDDcd000185.16E-293391No hitNo description
SuperFamilySSF541712.62E-193492IPR016177DNA-binding domain
SMARTSM003802.7E-333498IPR001471AP2/ERF domain
PROSITE profilePS5103221.0743492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-283492IPR001471AP2/ERF domain
PRINTSPR003671.3E-83546IPR001471AP2/ERF domain
PRINTSPR003671.3E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDMMTNKSKS SSSGKSKKSA SGGSGQQAEP SGCRYLGVRR RPWGRYAAEI RDPNTKERHW  60
LGTFDTAEEA ALAYDRAARS MRGKSRARTN FVYSDMPPGS SVTSIISPDE PQYAVYNNDF  120
PHFPGGLFSA PAQNVEQHYQ SGNGNHAGAD QFLLFGADQS GGGADLLDIG GINGGCEFFQ  180
DYYCNGNGNG VDESNNAAAM AMAAELPPLP PDITTSCSGG YFGSGFGGEA TSSGDNAAYT  240
TVMDGGVSAS AGWDYYGYGG GGGSTEMAMQ PQAPPEMNYG SSESDGINMF TTNSYSFSTS  300
NNYGGYWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-183591359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020917.12e-51PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLB9GYV03e-51B9GYV0_POPTR; AP2/EREBP-like transcription factor family protein
STRINGPOPTR_0003s15940.19e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-33ERF family protein